Bioinformatics

CAP5510 - Introduction to Bioinformatics

Fall 2009
MW 1:30pm to 2:45pm
Prof. Amar Mukherjee
A Primer on Molecular Biology
  • Major Events (pdf)
  • Cell(pdf)
  • MolBioPartI(pdf)
  • Mol.Bio.PartII(pdf)
  • Mol.Bio.PartIII(pdf)
  • Mol.Bio.PartIV(pdf)
  • Electrophoresis
  • Chain Termination Method
  • Polymerase Chain Reaction
  • Cutting and Pasting DNA
  • Cloning
  • A Handout on Mapping and Sequencing
  • Microarray
  • An Article on Microarray
  • An Article on DNA Sequencing
    • Sequence Alignment and Sequence Similarity
  • Sequence Alignment
  • String Similarity
  • Scoring, Local Alignment and Multiple Alignment
  • Sequence Comparison Tools
  • PAM250
  • BLOSUM62
  • A more efficient LCS algorithm
  • A more efficient LCS algorithm
  • Space Efficient Alignments
  • Reference paper on Linear Space Alignments
  • FASTA and BLAST
  • Reference paper on BLAST
    • Genome Assembly
  • Restriction Mapping: Partial Digest Problem
    • Motif Finding
  • Motif Finding Algorithms
    • Genome Assembly
  • Applications of Graph Theory in Bioinformatics
  • Genome Assembly
    • Gene Finding
  • Gene Finding Algorithms
  • Hidden Markov Model
    • Molecular Evolution
  • Clusterung Algorithms
  • Molecular Evolution
    • Genome Rearrangement
  • Genome Rearrangement
    • Last Modified November, 2009